5X7N
Crystal structure of meso-diaminopimelate decarboxylase (DAPDC) from Corynebacterium glutamicum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-19 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 114.543, 91.702, 95.161 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.461 - 1.720 |
R-factor | 0.1725 |
Rwork | 0.171 |
R-free | 0.21120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5x7m |
RMSD bond length | 0.022 |
RMSD bond angle | 2.124 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | HKL-2000 |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 95.170 | 1.750 |
High resolution limit [Å] | 1.720 | 1.720 |
Number of reflections | 95643 | |
<I/σ(I)> | 40.23 | |
Completeness [%] | 95.2 | |
Redundancy | 5.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Sodium citrate tribasic, Sodium cacodylate |