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5X5V

Crystal structure of pseudorabies virus glycoprotein D

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-16
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.979
Spacegroup nameC 1 2 1
Unit cell lengths79.398, 60.975, 60.681
Unit cell angles90.00, 111.22, 90.00
Refinement procedure
Resolution23.531 - 1.500
R-factor0.1703
Rwork0.169
R-free0.19230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2c36
RMSD bond length0.006
RMSD bond angle1.090
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.550
High resolution limit [Å]1.5001.500
Rpim0.129
Number of reflections42212
<I/σ(I)>25.5
Completeness [%]97.6
Redundancy6.1
CC(1/2)0.966
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52910.1 M ammonium acetate 0.1 M bis-tris pH 5.5 17 % PEG 10,000

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