5WT2
NifS from Helicobacter pylori
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-20 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 103.010, 103.010, 133.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.553 - 2.301 |
R-factor | 0.2165 |
Rwork | 0.215 |
R-free | 0.23930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ecx |
RMSD bond length | 0.003 |
RMSD bond angle | 0.624 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.553 | 2.400 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.074 | 0.821 |
Rmeas | 0.077 | 0.851 |
Rpim | 0.021 | 0.223 |
Total number of observations | 448717 | |
Number of reflections | 32281 | 3195 |
<I/σ(I)> | 24.34 | 3.78 |
Completeness [%] | 98.5 | 99.72 |
Redundancy | 7.44 | 7.614 |
CC(1/2) | 0.997 | 0.970 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | HEPES/NaOH, PEG 4000, glycerol, isopropanol |