5WNY
DNA polymerase beta substrate complex with incoming 5-FdUTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-11 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.480, 79.747, 55.570 |
Unit cell angles | 90.00, 107.23, 90.00 |
Refinement procedure
Resolution | 24.651 - 2.100 |
R-factor | 0.1852 |
Rwork | 0.181 |
R-free | 0.23720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.008 |
RMSD bond angle | 0.889 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.680 | 2.100 |
Rmerge | 0.137 | 0.096 | 0.459 |
Rmeas | 0.151 | 0.105 | 0.574 |
Rpim | 0.062 | 0.042 | 0.340 |
Total number of observations | 113357 | ||
Number of reflections | 24929 | 1286 | 1214 |
<I/σ(I)> | 14.3 | ||
Completeness [%] | 99.8 | 100 | 99.2 |
Redundancy | 4.5 | 6.1 | 2.6 |
CC(1/2) | 0.991 | 0.740 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 50 mM imidazole, pH 7.5, 16% PEG3350 and 350 mM sodium acetate |