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5WNY

DNA polymerase beta substrate complex with incoming 5-FdUTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2016-11-11
DetectorDECTRIS PILATUS3 R 200K-A
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths50.480, 79.747, 55.570
Unit cell angles90.00, 107.23, 90.00
Refinement procedure
Resolution24.651 - 2.100
R-factor0.1852
Rwork0.181
R-free0.23720
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2fms
RMSD bond length0.008
RMSD bond angle0.889
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]25.00025.0002.140
High resolution limit [Å]2.1005.6802.100
Rmerge0.1370.0960.459
Rmeas0.1510.1050.574
Rpim0.0620.0420.340
Total number of observations113357
Number of reflections2492912861214
<I/σ(I)>14.3
Completeness [%]99.810099.2
Redundancy4.56.12.6
CC(1/2)0.9910.740
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29550 mM imidazole, pH 7.5, 16% PEG3350 and 350 mM sodium acetate

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