5WNX
DNA polymerase beta substrate complex with incoming 6-TdGTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-09 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.243, 79.203, 55.625 |
Unit cell angles | 90.00, 107.36, 90.00 |
Refinement procedure
Resolution | 41.021 - 2.550 |
R-factor | 0.2143 |
Rwork | 0.206 |
R-free | 0.28950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.008 |
RMSD bond angle | 0.964 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.550 | 6.920 | 2.550 |
Rmerge | 0.133 | 0.084 | 0.766 |
Rmeas | 0.144 | 0.092 | 0.853 |
Rpim | 0.054 | 0.037 | 0.366 |
Total number of observations | 96895 | ||
Number of reflections | 13752 | 717 | 665 |
<I/σ(I)> | 7.4 | ||
Completeness [%] | 99.9 | 99.7 | 99.7 |
Redundancy | 7 | 6.4 | 5.3 |
CC(1/2) | 0.991 | 0.787 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 50 mM imidazole, pH 7.5, 16% PEG3350 and 350 mM sodium acetate |