Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5W9S

Zinc finger of human CXXC5 in complex with CpG DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E SUPERBRIGHT
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2012-08-22
DetectorRIGAKU
Wavelength(s)1.5418
Spacegroup nameP 32
Unit cell lengths40.110, 40.110, 81.200
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.740 - 2.100
R-factor0.2202
Rwork0.218
R-free0.25370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4hp3
RMSD bond length0.015
RMSD bond angle1.744
Data reduction softwareAimless (0.5.27)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]34.74034.7402.160
High resolution limit [Å]2.1008.9102.100
Rmerge0.0400.0211.013
Rmeas0.0420.0221.061
Rpim0.0120.0070.315
Total number of observations9658411967833
Number of reflections8535
<I/σ(I)>34.91122.6
Completeness [%]100.099.7100
Redundancy11.310.311.1
CC(1/2)1.0001.0000.774
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION6.529130% PEG-5000-MME, 0.2M ammonium sulfate, 0.1M MES

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon