5VXS
Crystal Structure Analysis of human CLYBL in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-12 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.999973 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 154.629, 154.629, 156.506 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 133.913 - 2.954 |
R-factor | 0.2081 |
Rwork | 0.205 |
R-free | 0.27240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vxc |
RMSD bond length | 0.009 |
RMSD bond angle | 1.120 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 156.506 | 156.506 | 2.964 |
High resolution limit [Å] | 2.954 | 13.709 | 2.954 |
Rmerge | 0.106 | 0.044 | 1.792 |
Rmeas | 0.109 | 0.045 | 1.833 |
Rpim | 0.023 | 0.011 | 0.385 |
Total number of observations | 999784 | 8858 | 10758 |
Number of reflections | 45801 | ||
<I/σ(I)> | 25.6 | 66.7 | 2.4 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 21.8 | 17 | 22.5 |
CC(1/2) | 0.998 | 0.996 | 0.756 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 1 uL protein at 4 mg/ml and 1 uL of the well solution, which is 85% dilution 0.2 M Ammonium Citrate Dibasic, 20% (w/v) PEG 3350 |