5VS3
Human DNA polymerase beta 8-oxoG:dA extension with dTTP after 90 s
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-12 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97931 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.400, 79.600, 55.200 |
Unit cell angles | 90.00, 107.10, 90.00 |
Refinement procedure
Resolution | 52.760 - 1.700 |
R-factor | 0.2084 |
Rwork | 0.206 |
R-free | 0.24870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rpx |
RMSD bond length | 0.007 |
RMSD bond angle | 1.355 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 52.760 | 52.760 | 1.900 |
High resolution limit [Å] | 1.700 | 12.000 | 1.700 |
Rmerge | 0.039 | 0.014 | 0.359 |
Rmeas | 0.054 | 0.020 | 0.498 |
Total number of observations | 165748 | ||
Number of reflections | 85729 | 62 | 24855 |
<I/σ(I)> | 13.07 | 24.61 | 2.28 |
Completeness [%] | 94.9 | 24 | 96.9 |
Redundancy | 1.933 | 1.387 | 1.937 |
CC(1/2) | 0.998 | 0.997 | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 50 mM imidazole pH 7.0-7.5, 350 mM sodium acetate, 16-18% PEG 3350 |