5VRZ
Human DNA polymerase beta 8-oxoG:dC extension with dTTP after 60 s
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-12 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97931 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.700, 79.800, 55.300 |
Unit cell angles | 90.00, 107.20, 90.00 |
Refinement procedure
Resolution | 52.830 - 2.050 |
R-factor | 0.1991 |
Rwork | 0.197 |
R-free | 0.24170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rpx |
RMSD bond length | 0.009 |
RMSD bond angle | 1.428 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 52.830 | 52.830 | 2.100 |
High resolution limit [Å] | 2.050 | 12.000 | 2.050 |
Rmerge | 0.042 | 0.030 | 0.180 |
Rmeas | 0.058 | 0.043 | 0.246 |
Total number of observations | 92541 | ||
Number of reflections | 48441 | 116 | 3316 |
<I/σ(I)> | 11.87 | 21.9 | 3.8 |
Completeness [%] | 93.1 | 44.6 | 90.8 |
Redundancy | 1.91 | 1.578 | 1.681 |
CC(1/2) | 0.997 | 0.994 | 0.922 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 50 mM imidazole pH 7.0-7.5, 350 mM sodium acetate, 16-18% PEG 3350 |