5VQ1
Crystal structure of human KRAS Q61A mutant in complex with GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | H 3 |
Unit cell lengths | 93.862, 93.862, 120.498 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 67.390 - 1.780 |
R-factor | 0.181 |
Rwork | 0.179 |
R-free | 0.21450 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.647 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 67.390 | 33.690 | 1.880 |
High resolution limit [Å] | 1.780 | 5.630 | 1.780 |
Rmerge | 0.120 | 0.041 | 0.797 |
Rmeas | 0.134 | 0.056 | 0.046 |
Rpim | 0.058 | 0.024 | 0.020 |
Number of reflections | 37921 | ||
<I/σ(I)> | 8.5 | ||
Completeness [%] | 99.9 | 98.2 | 100 |
Redundancy | 5.3 | 5.2 | 5.2 |
CC(1/2) | 0.995 | 0.997 | 0.614 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 mol/L sodium acetate, 0.1 mol/L Tris pH 8.5, 28% PEG 3,350 |