Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VO3

Crystal structure of DapE in complex with the products (succinic acid and diaminopimelic acid)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2016-02-08
DetectorADSC QUANTUM 315r
Wavelength(s)0.9794
Spacegroup nameI 2 2 2
Unit cell lengths56.648, 135.536, 149.613
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.321 - 1.954
R-factor0.1634
Rwork0.162
R-free0.18460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3isz
RMSD bond length0.008
RMSD bond angle1.174
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_1888)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0001.984
High resolution limit [Å]1.9501.954
Rmerge0.073
Number of reflections60902
<I/σ(I)>16
Completeness [%]99.5
Redundancy4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52930.15 M Hepes pH 7.5, 0.06 M Sodium potassium tartrate, 26 % Peg 8000

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon