Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VID

Receptor binding domain of BoNT/B in complex with mini-protein binder Bot.0671.2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyCCD
Collection date2016-08-19
DetectorADSC QUANTUM 315
Wavelength(s)0.979180
Spacegroup nameP 1 21 1
Unit cell lengths140.887, 87.314, 148.455
Unit cell angles90.00, 114.53, 90.00
Refinement procedure
Resolution67.529 - 2.750
R-factor0.2194
Rwork0.219
R-free0.23200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2nm1
RMSD bond length0.010
RMSD bond angle1.267
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]87.3102.800
High resolution limit [Å]2.7502.750
Rmerge0.1430.803
Number of reflections855984495
<I/σ(I)>8.12
Completeness [%]100.0100
Redundancy3.83.8
CC(1/2)0.701
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP291100 mM Tris, pH 8.0, 25 % PEG 400

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon