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5VCV

CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN IN COMPLEX WITH Dasatinib

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2015-12-09
DetectorRIGAKU SATURN 944+
Wavelength(s)1.54178
Spacegroup nameP 21 21 21
Unit cell lengths56.130, 68.630, 75.440
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.560 - 1.920
R-factor0.1574
Rwork0.155
R-free0.19680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3p1a
RMSD bond length0.012
RMSD bond angle1.287
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]19.56019.5601.970
High resolution limit [Å]1.9208.5901.920
Rmerge0.0530.0210.296
Rmeas0.0580.0240.341
Number of reflections224712751609
<I/σ(I)>27.9981.845.11
Completeness [%]98.289.396.8
Redundancy6.75.8474.136
CC(1/2)0.9990.9990.912
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52916.9 MG/ML MYT1, 25 mM HEPES, 100 MM SODIUM CHLORIDE, 0.5 mM DTT, 0.1 M CALCIUM CHLORIDE, 0.05 M TRIS pH 8.5, 10 % PEG 4000, 1 mM Dasatinib

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PDB entries from 2024-10-09

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