5V4N
Structure of HLA-DR1 with bound alpha3(135-145) peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-06-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 82.086, 118.410, 120.875 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.831 - 3.405 |
R-factor | 0.2146 |
Rwork | 0.212 |
R-free | 0.26290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qxa |
RMSD bond length | 0.002 |
RMSD bond angle | 0.655 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.831 | |
High resolution limit [Å] | 3.405 | |
Rmerge | 0.110 | 0.365 |
Number of reflections | 16628 | 1610 |
<I/σ(I)> | 6.04 | 2.6 |
Completeness [%] | 99.0 | 99 |
Redundancy | 2 | 2 |
CC(1/2) | 0.942 | 0.651 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298.15 | 23% PEG 3350, 0.1M KNO3, and 0.1M bis-tris-propane (pH 7.0) |