5V0T
Crystal structure of an alpha,alpha-trehalose-phosphate synthase (UDP-forming) from Burkholderia xenovorans in complex with glucose-6-phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-11 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 |
Unit cell lengths | 84.920, 105.950, 135.710 |
Unit cell angles | 91.36, 90.37, 89.97 |
Refinement procedure
Resolution | 50.000 - 1.950 |
R-factor | 0.1555 |
Rwork | 0.155 |
R-free | 0.17770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4b14 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.856 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.000 |
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.050 | 0.021 | 0.422 |
Rmeas | 0.071 | 0.030 | 0.597 |
Number of reflections | 329972 | 3542 | 24450 |
<I/σ(I)> | 11.68 | 34.86 | 1.95 |
Completeness [%] | 95.7 | 91.8 | 95.3 |
Redundancy | 1.994 | 1.951 | 1.995 |
CC(1/2) | 0.997 | 0.997 | 0.713 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 290 | MORPHEUS G2 (269140g2): 10% w/v PEG8000, 20% v/v EG, 20mM tartarate, citrate, oxamate, acetate, formate, 100mM MES/imidazole pH 6.5: 2mM UDP, 2mM glucose-6-phosphate, 2mM MgCl2: protein conc 22.24mg/mL: dc: wpj5-2 |