5UPH
Lipids bound lysosomal integral membrane protein 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-18 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 139.040, 139.040, 178.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.610 - 3.000 |
R-factor | 0.195 |
Rwork | 0.193 |
R-free | 0.22800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4q4f |
RMSD bond length | 0.010 |
RMSD bond angle | 1.280 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.7) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 98.310 | 4.240 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.151 | 0.631 |
Rpim | 0.266 | |
Number of reflections | 35701 | 22726 |
<I/σ(I)> | 12.4 | 4 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 12.4 | 12.3 |
CC(1/2) | 0.999 | 0.981 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 295 | protein in 10 mM HEPES, pH 7.5 200 mM NaCl mixed with equal amount of 0.22 M NaCl, 29% PPG 400 |