5UPG
Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PF-5081090
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU FR-E+ SUPERBRIGHT |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-01-17 |
| Detector | RIGAKU SATURN 944 |
| Wavelength(s) | 1.54 |
| Spacegroup name | P 1 |
| Unit cell lengths | 35.840, 47.400, 48.150 |
| Unit cell angles | 111.27, 109.12, 98.12 |
Refinement procedure
| Resolution | 40.910 - 1.700 |
| R-factor | 0.15 |
| Rwork | 0.147 |
| R-free | 0.18570 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3uhm |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.868 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | MOLREP |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 40.910 | 40.910 | 1.740 |
| High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
| Rmerge | 0.084 | 0.035 | 0.539 |
| Rmeas | 0.090 | 0.037 | 0.634 |
| Total number of observations | 208431 | ||
| Number of reflections | 28780 | 325 | 1908 |
| <I/σ(I)> | 18.42 | 66.05 | 2.38 |
| Completeness [%] | 97.7 | 97.3 | 88.6 |
| Redundancy | 7.242 | 11.215 | 3.289 |
| CC(1/2) | 0.998 | 1.000 | 0.733 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 290 | 100mM HEPES HCl, pH 7.7, 50mM CaCl2, 4% (w/v) Propanol, 25% (w/v) PEG 3350, PsaeA.00166.a.DG15.PD00471 at 5mg/ml + 1mM ZnCl2 + 1mM BSI 101565 (PF-5081090), cryo: 20% EG: tray 285924g10 |






