5UPF
Crystal structure of human NAMPT with isoindoline urea inhibitor compound 53
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.104, 106.578, 83.337 |
Unit cell angles | 90.00, 96.86, 90.00 |
Refinement procedure
Resolution | 24.740 - 1.690 |
R-factor | 0.217 |
Rwork | 0.215 |
R-free | 0.24100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2gvj |
RMSD bond length | 0.010 |
RMSD bond angle | 1.030 |
Data reduction software | XDS ((VERSION May 1)) |
Data scaling software | Aimless |
Refinement software | BUSTER (2.11.7) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 82.740 | 1.695 |
High resolution limit [Å] | 1.690 | 1.690 |
Rmerge | 0.111 | 0.655 |
Rmeas | 0.132 | 0.749 |
Rpim | 0.072 | 0.437 |
Total number of observations | 339858 | |
Number of reflections | 109884 | |
<I/σ(I)> | 9.7 | 2.1 |
Completeness [%] | 92.8 | 75.2 |
Redundancy | 3.1 | 2.5 |
CC(1/2) | 0.982 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 25% PEG 3350, 0.2 M ammonium sulfate, and 0.1 M HEPES, pH 7.5 |