5UMH
Crystal Structure of Catechol 1,2-dioxygenase protein from Burkholderia multivorans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-26 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97856 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.220, 52.330, 121.290 |
Unit cell angles | 90.00, 93.15, 90.00 |
Refinement procedure
Resolution | 31.148 - 1.350 |
R-factor | 0.13 |
Rwork | 0.130 |
R-free | 0.16310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dmh |
RMSD bond length | 0.007 |
RMSD bond angle | 0.932 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (dev_2621) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.148 | 31.148 | 1.390 |
High resolution limit [Å] | 1.350 | 6.040 | 1.350 |
Rmerge | 0.065 | 0.050 | 0.510 |
Rmeas | 0.076 | 0.059 | 0.600 |
Total number of observations | 584776 | ||
Number of reflections | 157491 | 1783 | 11597 |
<I/σ(I)> | 11.27 | 22.75 | 2.39 |
Completeness [%] | 99.4 | 94.5 | 99.9 |
Redundancy | 3.713 | 3.418 | 3.672 |
CC(1/2) | 0.996 | 0.992 | 0.833 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 290 | MCSG1 A12: 0.2 M Calcium Chloride 0.1 M Tris:HCl, pH 8.5 25 % (w/v) PEG 4000 |