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5UMC

Synthesis of novel seleno ureido containing compounds as SLC-0111 analogs. Investigations on carbonic anhydrases activity, glutathione peroxidase and X-ray crystallography

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]100
Detector technologyCCD
Collection date2016-06-07
DetectorADSC QUANTUM 210
Wavelength(s)1.00800
Spacegroup nameP 1 21 1
Unit cell lengths42.485, 41.498, 72.280
Unit cell angles90.00, 104.42, 90.00
Refinement procedure
Resolution41.500 - 2.150
R-factor0.19944
Rwork0.196
R-free0.26112
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4cq0
RMSD bond length0.014
RMSD bond angle1.658
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]41.5002.210
High resolution limit [Å]2.1502.150
Rmerge0.2250.793
Rpim0.1120.396
Number of reflections134931034
<I/σ(I)>5.72
Completeness [%]99.392.4
Redundancy54.8
CC(1/2)0.9780.755
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP281concentrated CA II at ~10 mg/mL was set up in SD-2 plates (Molecular Dimensions) with the following ratio of protein plus reservoir plus seeds: 250 nL + 225 nL + 25 nL. The plate was incubated at 8 C and the reservoir condition consisted of 2.9 M ammonium sulfate with 0.1 M Tris buffer at pH 8.3. Dry compound was added to the crystallization drop after crystals had formed and several days before data were collected.

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