5UBZ
Fab structure of HIV gp120 specific mAb 1E12
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-21 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033200 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.174, 79.174, 124.377 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.608 - 2.750 |
R-factor | 0.1931 |
Rwork | 0.189 |
R-free | 0.26400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wuu |
RMSD bond length | 0.009 |
RMSD bond angle | 1.167 |
Data reduction software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.610 | 2.920 |
High resolution limit [Å] | 2.750 | 2.750 |
Number of reflections | 19611 | |
<I/σ(I)> | 16.61 | 2.01 |
Completeness [%] | 99.8 | 99.8 |
Redundancy | 6.17 | 6.09 |
CC(1/2) | 0.999 | 0.715 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 291.15 | 28% (w/v) PEG 4000, 0.085 M sodium Acetate pH 4.6, and 15% glycerol |