Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5TYQ

Crystal structure of a holoenzyme methyltransferase involved in the biosynthesis of gentamicin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2015-06-29
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97
Spacegroup nameP 21 21 21
Unit cell lengths66.692, 66.922, 68.849
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.903 - 2.163
R-factor0.1969
Rwork0.194
R-free0.21600
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle1.179
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 Overall
Low resolution limit [Å]47.903
High resolution limit [Å]2.163
Rmerge0.175
Number of reflections16909
<I/σ(I)>17.01
Completeness [%]99.5
Redundancy11.6
CC(1/2)0.990
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291magnesium chloride, Tris, PEG 3350, PEG 400

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon