5TVR
JMJD2A in complex with Ni(II) and alpha-Ketoglutarate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 57.143, 101.122, 149.028 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.152 - 2.093 |
R-factor | 0.1829 |
Rwork | 0.181 |
R-free | 0.22360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rvh |
RMSD bond length | 0.005 |
RMSD bond angle | 0.928 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.152 | 2.130 |
High resolution limit [Å] | 2.090 | 2.090 |
Number of reflections | 51526 | |
<I/σ(I)> | 23.7 | 2.9 |
Completeness [%] | 99.8 | 99.8 |
Redundancy | 7 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 277 | 17.5% PEG-3350 and 0.1 M citrate pH 6.0 |