5T6G
2.45 A resolution structure of Norovirus 3CL protease in complex with the dipeptidyl inhibitor 7m (hexagonal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-08-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 59.576, 59.576, 357.702 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.570 - 2.450 |
R-factor | 0.191 |
Rwork | 0.188 |
R-free | 0.26100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ur9 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.924 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.6.1) |
Refinement software | PHENIX (dev_2510) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.570 | 49.570 | 2.550 |
High resolution limit [Å] | 2.450 | 8.830 | 2.450 |
Rmerge | 0.251 | 0.046 | 1.973 |
Number of reflections | 15076 | ||
<I/σ(I)> | 13.2 | ||
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 18.4 | 13.4 | 19.5 |
CC(1/2) | 0.997 | 0.999 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 25% (w/v) PEG 3350, 100 mM Tris, 200 mM lithium suflate |