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5T5M

TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRIGONAL FORM AT 2.5 A.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2015-06-11
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)1.00005
Spacegroup nameP 32 2 1
Unit cell lengths105.543, 105.543, 340.549
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.218 - 2.500
R-factor0.1587
Rwork0.158
R-free0.18170
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB : 5T5I
RMSD bond length0.011
RMSD bond angle1.671
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.22)
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6502.640
High resolution limit [Å]2.5002.500
Rmerge0.0900.940
Number of reflections77304
<I/σ(I)>13.62.2
Completeness [%]100.0100
Redundancy7.57.8
CC(1/2)0.9980.799
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8291100 mM Tricine/NaOH, pH 8.0, 30% (v/v) pentaerythritol propoxylate 426 (5/4 PO/OH), and 400 mM KCl. The crystallized sample has to be perfectly anoxic and extremely fresh (crystallization after 3 days of purification) without any freezing step. The optimal protein concentration is 30 mg/ml. Drops are made by mixing 1 ul of protein and 1 ul of precipitant. Crystals appeared usually after 7-10 days anoxically.

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PDB entries from 2025-06-18

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