5T3Z
3.5 Angstrom Crystal Structure of a Fully and Natively Glycosylated BG505 SOSIP.664 HIV-1 Env Trimer in Complex with the Broadly Neutralizing Antibodies IOMA and 10-1074
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-01-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00 |
Spacegroup name | H 3 |
Unit cell lengths | 217.258, 217.258, 154.935 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.631 - 3.500 |
R-factor | 0.2781 |
Rwork | 0.275 |
R-free | 0.29840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t3x |
RMSD bond length | 0.004 |
RMSD bond angle | 1.100 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 64.631 | 3.670 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.680 | 9.290 |
Rpim | 0.090 | 1.210 |
Number of reflections | 34373 | |
<I/σ(I)> | 12.6 | 1.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 61.1 | 59.7 |
CC(1/2) | 0.990 | 0.400 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 200 mM ammonium citrate tribasic pH 7.0 100 mM imidazole pH 7.0 20% PEG MME 2,000 |