5SXH
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.390, 50.990, 77.410 |
Unit cell angles | 90.00, 101.96, 90.00 |
Refinement procedure
Resolution | 41.570 - 1.780 |
R-factor | 0.1869 |
Rwork | 0.185 |
R-free | 0.21570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cqk |
RMSD bond length | 0.004 |
RMSD bond angle | 0.762 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | phenix.refine (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.550 | 1.830 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.102 | 1.100 |
Number of reflections | 32228 | |
<I/σ(I)> | 8.8 | 1 |
Completeness [%] | 98.9 | 99.1 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.376 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | PEG3350 |