5SKW
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 NSP14 in complex with Z1272494722
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.912, 67.484, 138.446 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.220 - 2.093 |
R-factor | 0.2005 |
Rwork | 0.197 |
R-free | 0.26710 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 7qgi |
RMSD bond length | 0.008 |
RMSD bond angle | 1.000 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.223 | 69.223 | 2.324 |
High resolution limit [Å] | 2.093 | 7.407 | 2.093 |
Rmeas | 0.245 | 0.068 | 1.400 |
Rpim | 0.094 | 0.027 | 0.521 |
Total number of observations | 126751 | 5578 | 6872 |
Number of reflections | 19373 | ||
<I/σ(I)> | 7 | 18.8 | 1.5 |
Completeness [%] | 91.7 | 99.9 | 62.7 |
Redundancy | 6.5 | 5.8 | 7.1 |
CC(1/2) | 0.993 | 0.998 | 0.634 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 278 | 1.26 M sodium phosphate monobasic, 0.14 M potassium phosphate dibasic |