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5SBD

Tubulin-maytansinoid-5b-complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-23
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.00003
Spacegroup nameP 21 21 21
Unit cell lengths105.075, 158.601, 180.439
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.580 - 2.250
R-factor0.1808
Rwork0.179
R-free0.21400
Structure solution methodDIFFERENCE FOURIER
Starting model (for MR)5lxt
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX (1.19.1_4122)
Refinement softwarePHENIX (1.19.1_4122)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.58049.5802.310
High resolution limit [Å]2.25010.0602.250
Rmerge0.1480.0301.805
Rmeas0.1530.0321.879
Total number of observations1958172
Number of reflections143010176010395
<I/σ(I)>15.0867.581.37
Completeness [%]99.698.799.3
Redundancy13.69312.70612.985
CC(1/2)0.9991.0000.561
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52933% PEG 4K, 4% glycerol, 30 mM MgCl2, 30 mM CaCl2, 0.1 M MES/Imidazole, 5 mM L-tyrosine

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PDB entries from 2024-07-17

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