Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5SAY

DDR1, N-[2-[3-(2-aminopyrimidin-5-yl)oxyphenyl]ethyl]-3-(trifluoromethoxy)benzamide, 2.190A, P1211, Rfree=27.7%

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2013-12-12
DetectorPSI PILATUS 6M
Wavelength(s)1.00000
Spacegroup nameP 1 21 1
Unit cell lengths45.690, 119.590, 61.890
Unit cell angles90.00, 94.92, 90.00
Refinement procedure
Resolution45.522 - 2.190
R-factor0.2057
Rwork0.202
R-free0.27700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse model
RMSD bond length0.009
RMSD bond angle1.257
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (dev_1589)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.52045.5222.250
High resolution limit [Å]2.1909.7902.190
Rmerge0.2130.0491.460
Rmeas0.2610.0581.746
Total number of observations116317
Number of reflections340314022528
<I/σ(I)>4.6819.890.81
Completeness [%]99.898.399.4
Redundancy3.453.3533.291
CC(1/2)0.9790.9930.342
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52939.2 mg/mL protein in 20mM HEPES/NaOH pH7.5, 5mM DTT, 5% glycerol, 0.1M NaCl mixed with reservoir consisting of 0.1M MES/NaOH pH 6.5, 0.2M KI, 25% PEG 4000

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon