5RYC
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z18197050
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91589 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.560, 79.400, 89.440 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.380 - 1.560 |
R-factor | 0.1755 |
Rwork | 0.174 |
R-free | 0.20510 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6xy7 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.509 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 79.400 | 79.400 | 1.600 |
High resolution limit [Å] | 1.560 | 6.980 | 1.560 |
Rmerge | 0.162 | 0.057 | 1.531 |
Rmeas | 0.176 | 0.063 | 1.681 |
Rpim | 0.068 | 0.025 | 0.678 |
Total number of observations | 419356 | 5014 | 28158 |
Number of reflections | 64078 | ||
<I/σ(I)> | 7.3 | 23.3 | 1.1 |
Completeness [%] | 99.9 | 99.7 | 99.9 |
Redundancy | 6.5 | 6 | 6 |
CC(1/2) | 0.995 | 0.995 | 0.491 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM MES/imidazole, pH 6.5, 20% PEG500 MME, 10% PEG20000 |