5RXW
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434856
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-10-24 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91589 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 62.476, 79.226, 89.250 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 51.230 - 1.340 |
| R-factor | 0.1754 |
| Rwork | 0.174 |
| R-free | 0.19720 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6xy7 |
| RMSD bond length | 0.016 |
| RMSD bond angle | 1.673 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 51.180 | 51.180 | 1.370 |
| High resolution limit [Å] | 1.340 | 5.990 | 1.340 |
| Rmerge | 0.117 | 0.052 | 1.182 |
| Rmeas | 0.128 | 0.058 | 1.353 |
| Rpim | 0.051 | 0.023 | 0.648 |
| Total number of observations | 580952 | 7520 | 28863 |
| Number of reflections | 98578 | ||
| <I/σ(I)> | 7.7 | 21.7 | 1.1 |
| Completeness [%] | 98.7 | 99.9 | 93.3 |
| Redundancy | 5.9 | 5.9 | 4.2 |
| CC(1/2) | 0.996 | 0.995 | 0.419 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM MES/imidazole, pH 6.5, 20% PEG500 MME, 10% PEG20000 |
