5RXF
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2074076908
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-11-22 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91188 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 62.150, 78.870, 88.870 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.980 - 1.260 |
| R-factor | 0.1931 |
| Rwork | 0.192 |
| R-free | 0.21450 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 6xy7 |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.651 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 88.870 | 88.870 | 1.290 |
| High resolution limit [Å] | 1.260 | 5.630 | 1.260 |
| Rmerge | 0.137 | 0.127 | 1.721 |
| Rmeas | 0.149 | 0.138 | 1.953 |
| Rpim | 0.060 | 0.055 | 0.908 |
| Total number of observations | 672675 | 9071 | 38512 |
| Number of reflections | 117806 | ||
| <I/σ(I)> | 6.1 | 14.6 | 1 |
| Completeness [%] | 99.6 | 99.8 | 99.2 |
| Redundancy | 5.7 | 6.1 | 4.5 |
| CC(1/2) | 0.992 | 0.974 | 0.489 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM MES/imidazole, pH 6.5, 20% PEG500 MME, 10% PEG20000 |
