5RX5
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2443429438
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91589 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.688, 79.546, 89.501 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.460 - 1.280 |
R-factor | 0.1972 |
Rwork | 0.196 |
R-free | 0.22280 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6xy7 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.455 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.460 | 59.460 | 1.350 |
High resolution limit [Å] | 1.280 | 4.040 | 1.280 |
Rmerge | 0.215 | 0.129 | 4.532 |
Rmeas | 0.234 | 0.141 | 5.063 |
Rpim | 0.092 | 0.055 | 2.228 |
Total number of observations | 712651 | 24843 | 85150 |
Number of reflections | 115880 | ||
<I/σ(I)> | 5.3 | 18.2 | 0.3 |
Completeness [%] | 99.9 | 100 | 99.8 |
Redundancy | 6.1 | 6.3 | 5.1 |
CC(1/2) | 0.990 | 0.984 | 0.316 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30 mM sodium nitrate, 30 mM dibasic sodium phosphate, 30 mM ammonium sulfate, 100 mM MES/imidazole, pH 6.5, 20% PEG500 MME, 10% PEG20000 |