5QOY
PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with YW-FY-378
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Detector technology | PIXEL |
| Collection date | 2017-07-26 |
| Detector | DECTRIS PILATUS 2M |
| Wavelength(s) | 0.91587 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 48.226, 60.434, 65.249 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 44.380 - 1.690 |
| R-factor | 0.2006 |
| Rwork | 0.198 |
| R-free | 0.25380 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | 5mp0 |
| RMSD bond length | 0.020 |
| RMSD bond angle | 2.084 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.5.32) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.710 | 28.710 | 1.740 |
| High resolution limit [Å] | 1.690 | 7.560 | 1.690 |
| Rmerge | 0.049 | 0.025 | 0.853 |
| Rmeas | 0.053 | 0.028 | 0.943 |
| Rpim | 0.021 | 0.012 | 0.392 |
| Total number of observations | 140173 | 1584 | 8610 |
| Number of reflections | 21675 | ||
| <I/σ(I)> | 19.3 | 54.5 | 2 |
| Completeness [%] | 99.0 | 97.6 | 97.3 |
| Redundancy | 6.5 | 5.6 | 5.6 |
| CC(1/2) | 0.999 | 0.999 | 0.765 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 277 | 0.1 M acetate, pH 4.5, 5-25% PEG3350 |
