Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5O05

GII.10 Vietnam 026 norovirus protruding domain in complex with Nanobody Nano-42

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-09
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.8729
Spacegroup nameP 21 21 21
Unit cell lengths87.930, 105.360, 107.750
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.327 - 2.000
R-factor0.182
Rwork0.180
R-free0.22150
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ONU and 4X4C
RMSD bond length0.009
RMSD bond angle1.082
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.32747.3272.120
High resolution limit [Å]2.0005.9502.000
Rmerge0.0900.0250.742
Rmeas0.1020.0280.838
Number of reflections68217279510775
<I/σ(I)>13.0845.982.15
Completeness [%]99.699.198.8
Redundancy4.4974.3924.646
CC(1/2)0.9980.9990.749
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2910.2 M potassium iodide, 20% (w/v) PEG3350

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon