Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5O02

GII.17 Kawasaki323 protruding domain in complex with Nanobody Nano-4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-1
Synchrotron siteESRF
BeamlineMASSIF-1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-07
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.965
Spacegroup nameC 1 2 1
Unit cell lengths118.470, 64.040, 70.030
Unit cell angles90.00, 97.26, 90.00
Refinement procedure
Resolution45.060 - 1.720
R-factor0.1518
Rwork0.150
R-free0.18050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5F4M and 4X4C
RMSD bond length0.006
RMSD bond angle1.051
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.06045.0601.800
High resolution limit [Å]1.6905.0501.690
Rmerge0.0680.0320.427
Rmeas0.0820.0380.521
Number of reflections5589422228412
<I/σ(I)>11.5531.512.26
Completeness [%]96.597.890.2
Redundancy3.1653.3782.93
CC(1/2)0.9970.9970.849
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52910.2 M calcium acetate, 10% (w/v) PEG8000, 0.1 M imidazole

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon