5NW0
pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetamidocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 17)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-21 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9282 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 94.771, 94.771, 368.359 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.570 - 2.300 |
R-factor | 0.1971 |
Rwork | 0.195 |
R-free | 0.23850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vcb |
RMSD bond length | 0.007 |
RMSD bond angle | 1.206 |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.570 | 49.570 | 2.350 |
High resolution limit [Å] | 2.300 | 11.500 | 2.300 |
Rmerge | 0.088 | 0.029 | 0.802 |
Rmeas | 0.094 | 0.031 | 0.856 |
Rpim | 0.034 | 0.012 | 0.297 |
Number of reflections | 75814 | ||
<I/σ(I)> | 15 | ||
Completeness [%] | 99.8 | 99 | 99.9 |
Redundancy | 7.7 | 6.6 | 8.1 |
CC(1/2) | 0.999 | 1.000 | 0.858 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 291 | PEG 3350, MgOAc, Sodium cacodylate, DTT |