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5NRB

A Native Ternary Complex of Alpha-1,3-Galactosyltransferase (a-3GalT) Supports a Conserved Reaction Mechanism for Retaining Glycosyltransferases - alpha-3GalT in complex with Co2+, UDP-Gal and lactose - a3GalT-Co2+-UDP-Gal-LAT-1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-17
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9686
Spacegroup nameC 1 2 1
Unit cell lengths132.963, 65.646, 82.654
Unit cell angles90.00, 102.92, 90.00
Refinement procedure
Resolution58.560 - 2.240
R-factor0.2015
Rwork0.199
R-free0.24620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5nr9
RMSD bond length0.002
RMSD bond angle0.518
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((dev_2219: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.5602.320
High resolution limit [Å]2.2402.240
Rmerge0.0910.582
Number of reflections334283298
<I/σ(I)>9.322.22
Completeness [%]99.099
Redundancy3.33.3
CC(1/2)0.991
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52910.02 M L-Na-glutamate, 0.02 M alanine (racemic), 0.02 M glycine, 0.02 M L-lysine (racemic), 0.02 M serine (racemic), 0.1 M Sodium HEPES-MOPS (acid) mix pH 7.5, 20% (v/v) glycerol and 10% (w/v) PEG 4000.

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PDB entries from 2024-09-04

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