5NMT
Dimer structure of Sortilin ectodomain crystal form 1, 2.3A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-30 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.99998 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 97.020, 131.130, 154.630 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.637 - 2.300 |
R-factor | 0.2056 |
Rwork | 0.205 |
R-free | 0.23390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3f6k |
RMSD bond length | 0.003 |
RMSD bond angle | 0.633 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11_2567: ???)) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 69.640 |
High resolution limit [Å] | 2.300 |
Rmerge | 0.103 |
Rmeas | 0.115 |
Rpim | 0.061 |
Number of reflections | 87510 |
<I/σ(I)> | 9.8 |
Completeness [%] | 99.4 |
Redundancy | 6.3 |
CC(1/2) | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 291 | 0.18 M Magnesium formate dihydrate pH 7.0, 18 % PEG 3350 (w/v), 10 mM TCEP hydrochloride |