5NM3
Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, pre-illuminated
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-10 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.87260 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.700, 198.500, 223.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.980 - 3.300 |
R-factor | 0.2351 |
Rwork | 0.234 |
R-free | 0.26680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c5k |
RMSD bond length | 0.007 |
RMSD bond angle | 1.172 |
Data reduction software | XDS |
Data scaling software | XSCALE (Nov 1, 2016) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.980 | 19.980 | 3.380 |
High resolution limit [Å] | 3.300 | 15.000 | 3.300 |
Rmerge | 0.157 | 0.029 | 1.469 |
Rmeas | 0.180 | 0.033 | 1.677 |
Total number of observations | 236771 | ||
Number of reflections | 57827 | 400 | 4096 |
<I/σ(I)> | 7.68 | 32.53 | 0.96 |
Completeness [%] | 99.1 | 54.3 | 99.9 |
Redundancy | 4.094 | 3.902 | 4.309 |
CC(1/2) | 0.994 | 0.999 | 0.312 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 100 mM Tris/HCl pH 8.5, 200 mM NaCl, 25% PEG3350 |