5NK7
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 2a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.873, 107.566, 40.508 |
Unit cell angles | 90.00, 108.76, 90.00 |
Refinement procedure
Resolution | 38.356 - 1.889 |
R-factor | 0.1705 |
Rwork | 0.169 |
R-free | 0.19950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i9u |
RMSD bond length | 0.006 |
RMSD bond angle | 0.949 |
Data reduction software | XDS (XDSapp 2.0) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.356 | 2.000 |
High resolution limit [Å] | 1.889 | 1.890 |
Rmeas | 0.193 | 0.810 |
Number of reflections | 21343 | |
<I/σ(I)> | 7.32 | 1.78 |
Completeness [%] | 99.7 | 99.5 |
Redundancy | 3.83 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 291 | 37.5% MPD/PEG1000/PEG3350 (MD), 0.25 M Amino Acids Mix (MD), 0.1 M Buffer System 3 (MD) pH8.5 |