5NID
Crystal structure of human LTA4H mutant D375N in open conformation (crystal form II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9762 |
Spacegroup name | H 3 |
Unit cell lengths | 153.930, 153.930, 76.790 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.436 - 1.568 |
R-factor | 0.1836 |
Rwork | 0.182 |
R-free | 0.20980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ni2 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.956 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.440 | 1.624 |
High resolution limit [Å] | 1.568 | 1.568 |
Rmerge | 0.059 | 1.882 |
Rpim | 0.023 | 0.785 |
Number of reflections | 95099 | 9558 |
<I/σ(I)> | 13.67 | 0.96 |
Completeness [%] | 99.9 | 99.74 |
Redundancy | 6.9 | 6.8 |
CC(1/2) | 0.999 | 0.374 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 8% (w/v) PEG 20 000, 15% (w/v) PEG MME 550, 100 mM Hepes/MOPS pH 7.7-8.0, 15 mM CaCl2, 15 mM MgCl2 |