Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NH1

Structure of the C-terminal domain of human Gasdermin D

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-08
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.999998
Spacegroup nameP 21 21 2
Unit cell lengths125.730, 47.980, 37.650
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.827 - 2.040
R-factor0.2328
Rwork0.231
R-free0.26370
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5b5r
RMSD bond length0.002
RMSD bond angle0.553
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10pre_2131: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.8272.160
High resolution limit [Å]2.0402.040
Rmerge0.1960.956
Number of reflections144212240
<I/σ(I)>8.632.2
Completeness [%]95.096.1
Redundancy8.48.6
CC(1/2)0.9920.717
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP3031.229 M NaCitrate, HEPES, pH 7.25

250059

PDB entries from 2026-03-04

PDB statisticsPDBj update infoContact PDBjnumon