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5NCJ

GriE in complex with manganese, succinate and (2S,4R)-5-hydroxyleucine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2013-04-10
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.00003
Spacegroup nameC 1 2 1
Unit cell lengths148.740, 56.061, 73.802
Unit cell angles90.00, 112.46, 90.00
Refinement procedure
Resolution51.910 - 1.529
R-factor0.1563
Rwork0.155
R-free0.17340
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5nch
RMSD bond length0.007
RMSD bond angle0.923
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (dev_2689)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.7271.555
High resolution limit [Å]1.5291.529
Rmerge0.0930.867
Rpim0.0380.362
Number of reflections801884262
<I/σ(I)>112.1
Completeness [%]94.299.5
Redundancy6.76.6
CC(1/2)0.9950.757
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5293MORPHEUS (Molecular Dimensions) condition F1: 0.12 M Monosaccharides, 0.1 M Buffer System 1 pH 6.5, 50 % v/v Precipitant Mix 1 co-crystallization with: 10 mM L-leucine, 10 mM alpha-ketoglutarate, 10 mM DTT, 125.5 mM Tris/HCl and 1 mM 1 mM MnCl2 and 2 mM Na-ascorbate.

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PDB entries from 2024-07-10

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