5NBN
Crystal structure of the Arp4-N-actin-Arp8-Ino80HSA module of INO80
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 172.294, 263.909, 241.402 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.399 - 4.000 |
R-factor | 0.1953 |
Rwork | 0.193 |
R-free | 0.24220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4am6 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.675 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (2.6.1) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.430 | 49.430 | 4.140 |
High resolution limit [Å] | 4.000 | 15.490 | 4.000 |
Rmerge | 0.289 | 0.071 | 1.345 |
Rmeas | 0.306 | 0.075 | 1.418 |
Rpim | 0.098 | 0.025 | 0.445 |
Number of reflections | 46724 | ||
<I/σ(I)> | 8.2 | 26.4 | 2.3 |
Completeness [%] | 99.9 | 96.8 | 100 |
Redundancy | 9.6 | 8.4 | 10 |
CC(1/2) | 0.994 | 0.996 | 0.688 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M sodium citrate tribasic dihydrate, 18% (w/v) polyethylene glycol 3,350, latrunculin A solved in DMSO molar ration 1:1.5 (protein : latrunculin A) |