5NAY
Crystal structures of homooligomers of collagen type IV. alpha1NC1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-05-14 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.87 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 94.851, 127.045, 130.543 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.120 - 1.800 |
R-factor | 0.1767 |
Rwork | 0.175 |
R-free | 0.19940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1t60 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.273 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 91.046 | 5.690 | 1.900 |
High resolution limit [Å] | 1.800 | 4.020 | 1.800 |
Rmerge | 0.037 | 0.388 | |
Rmeas | 0.090 | 0.044 | 0.463 |
Rpim | 0.048 | 0.023 | 0.248 |
Total number of observations | 479345 | ||
Number of reflections | 142960 | ||
<I/σ(I)> | 10.7 | 14.9 | 1.9 |
Completeness [%] | 98.2 | 94.7 | 99 |
Redundancy | 3.4 | 3.5 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 1.4 M lithium sulfate and 0.1 M Mes pH 6.5 |