5N5Q
Human TTR altered conformation from soaking in iron chloride.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-16 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.73915 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 42.730, 81.810, 69.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.900 - 2.530 |
R-factor | 0.19508 |
Rwork | 0.192 |
R-free | 0.25252 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k1j |
RMSD bond length | 0.013 |
RMSD bond angle | 1.604 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.680 |
High resolution limit [Å] | 2.530 | 2.530 |
Rmerge | 0.200 | 1.980 |
Number of reflections | 15593 | 2460 |
<I/σ(I)> | 8.28 | 0.83 |
Completeness [%] | 99.2 | 95.3 |
Redundancy | 13.21 | 12.2 |
CC(1/2) | 0.996 | 0.300 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | protein: 10 mg/ml Dialysed in 100 milli-M NaCl, 50 milli-M sodium acetate, pH 5.5 precipitant: 27 % polyethylene glycol 4,000, 0.2 M imidazole malate, pH 6.0. cryosoak: 40% SM3 (, 25 % MPEG 5K, 25 % diethylene glycol + 25 % ethylene glycol + 25 % glycerol + 25 % 1,4-dioxane) 25 % MPEG 5K, 0.1 M CHC (citric acid, HEPES, CHES: 90 % acid /10 % basic), 30 mM FeCl2, 2 h soak. |