5N5L
Crystal structure of human Pim-1 kinase in complex with a consensuspeptide and [2-oxo-2-(1H-pyrrol-2-yl)ethyl] 5-bromo-1H-indole-3-carboxylate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-16 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.918409 |
Spacegroup name | P 65 |
Unit cell lengths | 97.670, 97.670, 80.329 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.835 - 1.970 |
R-factor | 0.1618 |
Rwork | 0.160 |
R-free | 0.19520 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3we8 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.765 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.090 |
High resolution limit [Å] | 1.970 | 1.970 |
Rmeas | 0.076 | 0.570 |
Number of reflections | 30857 | 4956 |
<I/σ(I)> | 16.63 | 3.17 |
Completeness [%] | 99.9 | 99.4 |
Redundancy | 6.84 | 6.58 |
CC(1/2) | 0.990 | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | HEPES Li2SO4 Glycerol DTT BIS-TRIS-propane PEG3350 Ethylene-glycol DMSO |