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5N55

mono-Zinc VIM-5 metallo-beta-lactamase in complex with (1-chloro-4-hydroxyisoquinoline-3-carbonyl)-L-tryptophan (Compound 2)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2016-05-02
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9795
Spacegroup nameF 2 2 2
Unit cell lengths66.219, 155.191, 267.733
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.683 - 1.990
R-factor0.1944
Rwork0.191
R-free0.25260
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5a87
RMSD bond length0.014
RMSD bond angle1.094
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.6.0)
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.6802.020
High resolution limit [Å]1.9901.990
Rmerge0.0981.197
Rmeas0.1021.244
Rpim0.0280.335
Number of reflections473934703
<I/σ(I)>15.32.1
Completeness [%]99.999.7
Redundancy13.113.6
CC(1/2)0.9990.565
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M Lithium Chloride, 0.1 M 2-(N-morpholino)ethanesulfonic acid (MES), 20% (w/v) Polyethylene glycol 6000, pH=6.0

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PDB entries from 2024-08-07

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